BIOTIA‑DX ISOLATE and OUTBREAK

Affordable microbial sequencing to support clinical decision-making. Identify species, predict resistance, and detect outbreaks.

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Key Features

BIOTIA-DX Isolate & Outbreak provides rapid genomic analysis of bacterial and fungal isolates to support infection control and antimicrobial stewardship. Get species and strain identification, antimicrobial resistance profiling, and outbreak cluster detection with unmatched accuracy and cost-efficiency. Detect, track, and respond to infectious threats with confidence.

BIOTIA-DX OUTBREAK

Track HAIs Before They Spread

BIOTIA-DX OUTBREAK provides critical information to infection control teams. Find clusters of closely related pathogens and identify sources of transmission. Track changing drug resistance patterns over time. Compare your facilities samples to publicly available outbreak genomes to identify community acquired vs facility acquired outbreaks.

Key Features

Identify clonal complexes of microbial isolates
Phylogenetic trees to visualize organism relatedness
Custom cgMLSTs determine relatedness based on thousands of genomic markers
Grow analysis as more samples are collected
Find and track transmission patterns
Compare to community acquired microbes

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This software is for research use only

View a Sample Report

BIOTIA-DX ISOLATE

Analyze Microbial Isolates

BIOTIA-DX Isolate brings best in class genomic analysis to pathogen isolate sequencing. Remove any ambiguity about your isolated cultures with deep taxonomic characterization and genomic resistance analysis. Identify precise strain types for different species and, with BIOTIA-DX Outbreak, find outbreak clusters.

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Includes the BIOTIA-DX RESISTANCE module for genetic prediction of antimicrobial resistance.

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Key Features

Determine species and strain from a database of thousands of organisms
Predict antimicrobial resistance with BIOTIA-DX RESISTANCE
Tag samples with LPSN taxonomy
Assemble and annotate genome for downstream analysis
Determine strain through custom cgMLST
Characterize plasmids such as those that carry mecA
Disambiguate tricky species groups like Ecoli Shigella and Klebsiella
Works with BIOTIA-DX Outbreak for outbreak cluster analysis
Validated on Illumina and ONT data

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Specialized tools available for certain pathogens, including: Tuberculosis, Acinetobacter

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For research use only

Clinical Impact

Rapidly detect and contain outbreak hospital-acquired infections before they spread
Use genomic resistance profiling to inform treatment for multi-drug resistant infections
Accurate strain identification to support treatment of rare or hard to culture bacteria and fungi
Power pathogen surveillance studies, AMR discovery, and translational applications

Logistics

Send isolates as cell pellets, cryo-stock, or on slant
Receive reports in 5-10 days
Bioinformatic outputs available
software-only solution available
Outbreak analysis is included at no additional cost
Outbreak aanlysis can be updated with new samples
Works with clinical isolates and screening cultures

Predict antimicrobial resistance with best-in-class accuracy

BIOTIA-DX RESISTANCE achieved the best antimicrobial resistance accuracy at CAMDA 2025. Read our preprint on bioRxiv.

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Simple Pricing

$200 per bacterial isolate (sequencing + analysis)
$240 per fungal isolate (sequencing + analysis)
Works with in-house sequencing: $40 for analysis only

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No minimum number of samples
Outbreak analysis at no additional cost

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Developed with MAYO Clinic

Co-developed with the Mayo Clinic to strengthen the clinical components of BIOTIA-DX and validate our approach on clinical data.

There is great promise in using sequencing for infectious disease diagnostics, especially for challenging or drug resistant infections.

Interested? Get in touch.

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